So I've been working with Concrete5 and using Git for version control for about a couple weeks now and I was doing all my git commits through command line. I recently tried a new git app called Tower which basically is a GUI Git client.

Anyways, I looked on the file structure in the root folder and my Mac finder is listing extra folders that mimics the /concrete folder but the Git client is not showing those folders. In fact, it won't list those folders as folders to staged to commit even if I edit somethign in there.

I've been installing packages through those root folders and them moving them afterwards. Is this normal?

Please see attachment. (EWL folder)
Finder window on top, git client on bottom.

Thanks.