Custom autonav template won't even display.

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I have developed a custom Bootstrap-based dropdown menu system to use on a client's website. Unfortunately, my dropdown menus appear behind the content of my page. I cannot for the life of me figure out why this is. I've tried using the z-index property to make them appear in the foreground, but this doesn't help. I've also tried overflow: visible in the relevant divs.

However, now the problem is even worse. When I visit my site, the dropdowns don't even appear styled. When I look at the source, it appears that my view.php file is being bypassed even though I've selected the appropriate template for the block.

Can anyone help me with these issues?